Bioconductor Installation problem

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installation problem

5.4 years ago machne • 0

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installation problem dmrseq bumphunter

updated 5.5 years ago by shepherl 3.9k • written 5.5 years ago by guy.bioinfo ▴ 10

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R bioclite installation problem linuxmint virtualbox

updated 5.7 years ago by James W. MacDonald 65k • written 5.7 years ago by tasnif.rahman • 0

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installation problem software error org.Rn.eg.db

updated 5.8 years ago by James W. MacDonald 65k • written 5.8 years ago by E.M. Lodder ▴ 40

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clusterprofiler installation problem

5.9 years ago heir_of_isildur88 • 0

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installation problem

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by h.burke • 0

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packages installation problem rsamtools chippeakanno ensembldb

6.4 years ago inzirio ▴ 10

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biocinstaller root installation installation problem

6.5 years ago charles.tilford ▴ 10

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installation problem biocLite

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by majeedaasim • 0

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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